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  5. Seita.2G380200.1

Seita.2G380200.1


Description : component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex


Gene families : OG_42_0004261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004261_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G380200.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
A4A49_10742 No alias ribosome biogenesis protein wdr12-like protein 0.02 Orthogroups_2024-Update
At5g15550 No alias Ribosome biogenesis protein WDR12 homolog... 0.05 Orthogroups_2024-Update
Bradi1g22300 No alias Transducin/WD40 repeat-like superfamily protein 0.12 Orthogroups_2024-Update
Brara.B00615.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.02 Orthogroups_2024-Update
GRMZM2G050501 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.01G086000 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G027800 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Mp3g03210.1 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.06 Orthogroups_2024-Update
Potri.017G093300 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Orthogroups_2024-Update
Pp1s294_14V6 No alias T20K14.160; transducin / WD-40 repeat protein family... 0.02 Orthogroups_2024-Update
Sobic.002G365900.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.13 Orthogroups_2024-Update
Sopen01g053090 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
Sopen02g033500 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
evm.model.tig00021428.5 No alias (at5g15550 : 166.0) Transducin/WD40 repeat-like... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR012972 NLE 9 76
IPR001680 WD40_repeat 267 301
IPR001680 WD40_repeat 198 231
IPR001680 WD40_repeat 139 180
IPR001680 WD40_repeat 352 389
No external refs found!