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  5. Seita.2G381600.1

Seita.2G381600.1


Description : transcriptional co-repressor *(AFP/NINJA)


Gene families : OG_42_0000789 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000789_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G381600.1
Cluster HCAA Clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
A4A49_14878 No alias ninja-family protein afp1 0.02 Orthogroups_2024-Update
At1g69260 No alias Ninja-family protein AFP1... 0.03 Orthogroups_2024-Update
At3g02140 No alias TMAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX2] 0.03 Orthogroups_2024-Update
Brara.A03618.1 No alias transcriptional co-repressor *(AFP/NINJA) 0.02 Orthogroups_2024-Update
Brara.B03380.1 No alias transcriptional co-repressor *(AFP/NINJA) 0.05 Orthogroups_2024-Update
Brara.I05067.1 No alias transcriptional co-repressor *(AFP/NINJA) 0.02 Orthogroups_2024-Update
Glyma.04G162100 No alias ABI five binding protein 3 0.04 Orthogroups_2024-Update
Sopen05g007040 No alias Protein of unknown function (DUF1675) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012463 Ninja_motif 28 65
IPR032310 NINJA_B 89 133
IPR032308 Jas 276 310
No external refs found!