Seita.2G385500.1

Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway & component *(eS21) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.2G385500.1
Cluster	HCAA Clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
At2g40700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
At5g65900	No alias	DEAD-box ATP-dependent RNA helicase 27...	0.04	Orthogroups_2024-Update
Bradi1g26197	No alias	DEA(D/H)-box RNA helicase family protein	0.07	Orthogroups_2024-Update
Bradi4g41160	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Orthogroups_2024-Update
Brara.A02921.1	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway	0.04	Orthogroups_2024-Update
Cre03.g156150	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre07.g314900	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
Glyma.06G209400	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Orthogroups_2024-Update
HORVU4Hr1G000640.1	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway	0.03	Orthogroups_2024-Update
Kfl00121_0050	kfl00121_0050_v1.1	(at5g54910 : 607.0) DEA(D/H)-box RNA helicase family...	0.06	Orthogroups_2024-Update
Kfl00630_0030	kfl00630_0030_v1....	(at3g18600 : 568.0) P-loop containing nucleoside...	0.03	Orthogroups_2024-Update
Mp7g12890.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.02	Orthogroups_2024-Update
Sopen03g033470	No alias	DEAD/DEAH box helicase	0.03	Orthogroups_2024-Update
evm.model.tig00000441.11	No alias	(at3g18600 : 300.0) P-loop containing nucleoside...	0.02	Orthogroups_2024-Update
evm.model.tig00000441.12	No alias	(at5g65900 : 171.0) DEA(D/H)-box RNA helicase family...	0.02	Orthogroups_2024-Update
evm.model.tig00020604.24	No alias	(at5g54910 : 437.0) DEA(D/H)-box RNA helicase family...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	16Dec
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0017182	peptidyl-diphthamide metabolic process	IEP	Predicted GO
BP	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine	IEP	Predicted GO
BP	GO:0018202	peptidyl-histidine modification	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predicted GO
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
MF	GO:0043130	ubiquitin binding	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0090560	2-(3-amino-3-carboxypropyl)histidine synthase activity	IEP	Predicted GO
BP	GO:1900247	regulation of cytoplasmic translational elongation	IEP	Predicted GO
BP	GO:2000765	regulation of cytoplasmic translation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025313	DUF4217	731	790
IPR011545	DEAD/DEAH_box_helicase_dom	365	535
IPR001650	Helicase_C	582	688
IPR001931	Ribosomal_S21e	197	227

External Links

No external refs found!

Seita.2G385500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation