1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G385700.1

Seita.2G385700.1


Description : component *(uS3) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G385700.1
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
270414 No alias Ribosomal protein S3 family protein 0.03 Orthogroups_2024-Update
A4A49_00336 No alias 40s ribosomal protein s3-3 0.13 Orthogroups_2024-Update
At2g31610 No alias 40S ribosomal protein S3-1... 0.03 Orthogroups_2024-Update
At5g35530 No alias 40S ribosomal protein S3-3... 0.04 Orthogroups_2024-Update
Bradi3g16150 No alias Ribosomal protein S3 family protein 0.14 Orthogroups_2024-Update
Brara.C01612.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.C01619.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.33 Orthogroups_2024-Update
Brara.D01897.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.32 Orthogroups_2024-Update
Brara.D01899.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Cre02.g102250 No alias Ribosomal protein S3 family protein 0.06 Orthogroups_2024-Update
GRMZM2G074300 No alias Ribosomal protein S3 family protein 0.13 Orthogroups_2024-Update
Glyma.09G156600 No alias Ribosomal protein S3 family protein 0.07 Orthogroups_2024-Update
Glyma.10G133100 No alias Ribosomal protein S3 family protein 0.1 Orthogroups_2024-Update
Glyma.10G133800 No alias Ribosomal protein S3 family protein 0.05 Orthogroups_2024-Update
Glyma.16G207300 No alias Ribosomal protein S3 family protein 0.05 Orthogroups_2024-Update
Glyma.16G207400 No alias Ribosomal protein S3 family protein 0.12 Orthogroups_2024-Update
Glyma.20G083300 No alias Ribosomal protein S3 family protein 0.17 Orthogroups_2024-Update
Kfl00057_0410 kfl00057_0410_v1.1 (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.09 Orthogroups_2024-Update
MA_10436283g0010 No alias (at5g35530 : 397.0) Ribosomal protein S3 family protein;... 0.13 Orthogroups_2024-Update
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.15 Orthogroups_2024-Update
PSME_00007401-RA No alias (at5g35530 : 366.0) Ribosomal protein S3 family protein;... 0.15 Orthogroups_2024-Update
PSME_00040312-RA No alias (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.13 Orthogroups_2024-Update
Potri.006G222100 No alias Ribosomal protein S3 family protein 0.12 Orthogroups_2024-Update
Potri.018G049100 No alias Ribosomal protein S3 family protein 0.1 Orthogroups_2024-Update
Pp1s127_74V6 No alias 40s ribosomal protein 0.11 Orthogroups_2024-Update
Pp1s136_175V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s29_222V6 No alias 40s ribosomal protein 0.27 Orthogroups_2024-Update
Pp1s31_178V6 No alias 40s ribosomal protein 0.14 Orthogroups_2024-Update
Pp1s41_146V6 No alias 40s ribosomal protein 0.22 Orthogroups_2024-Update
Pp1s454_3V6 No alias 40s ribosomal protein 0.2 Orthogroups_2024-Update
Sobic.002G371100.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Sobic.007G053300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.39 Orthogroups_2024-Update
Solyc07g041310 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.27 Orthogroups_2024-Update
Solyc08g061850 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.22 Orthogroups_2024-Update
Solyc08g061960 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.26 Orthogroups_2024-Update
Sopen07g020630 No alias Ribosomal protein S3, C-terminal domain 0.3 Orthogroups_2024-Update
Sopen08g017410 No alias Ribosomal protein S3, C-terminal domain 0.22 Orthogroups_2024-Update
Sopen08g017480 No alias Ribosomal protein S3, C-terminal domain 0.22 Orthogroups_2024-Update
evm.model.contig_2149.7 No alias (at5g35530 : 302.0) Ribosomal protein S3 family protein;... 0.43 Orthogroups_2024-Update
evm.model.tig00021462.41 No alias (at2g31610 : 358.0) Ribosomal protein S3 family protein;... 0.28 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0003735 structural constituent of ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 22 95
IPR001351 Ribosomal_S3_C 108 190
No external refs found!