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  5. Seita.2G385800.1

Seita.2G385800.1


Description : component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG_42_0003700 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003700_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G385800.1
Cluster HCAA Clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
227744 No alias probable small nuclear ribonucleoprotein G 0.04 Orthogroups_2024-Update
Cre13.g566050 No alias probable small nuclear ribonucleoprotein G 0.02 Orthogroups_2024-Update
Glyma.03G197100 No alias probable small nuclear ribonucleoprotein G 0.04 Orthogroups_2024-Update
Glyma.19G195100 No alias probable small nuclear ribonucleoprotein G 0.03 Orthogroups_2024-Update
HORVU2Hr1G031890.2 No alias component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.05 Orthogroups_2024-Update
LOC_Os03g29740 No alias LSM domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_91807g0010 No alias (at2g23930 : 139.0) probable small nuclear... 0.03 Orthogroups_2024-Update
Mp4g07410.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.02 Orthogroups_2024-Update
PSME_00047756-RA No alias (at2g23930 : 101.0) probable small nuclear... 0.03 Orthogroups_2024-Update
Potri.006G211100 No alias Small nuclear ribonucleoprotein family protein 0.03 Orthogroups_2024-Update
Sobic.001G340500.1 No alias component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.02 Orthogroups_2024-Update
evm.model.tig00020553.48 No alias (at2g23930 : 97.4) probable small nuclear... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 71
No external refs found!