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  5. Seita.2G414500.1

Seita.2G414500.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G414500.1
Cluster HCAA Clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
A4A49_00880 No alias pectinesterase qrt1 0.03 Orthogroups_2024-Update
Glyma.01G068100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Mp1g00190.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
PSME_00015801-RA No alias (at5g19730 : 236.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00045263-RA No alias (at5g19730 : 435.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.012G115200 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Sobic.002G370300.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 38 340
No external refs found!