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  5. Seita.2G416900.1

Seita.2G416900.1


Description : poly(A) RNA polymerase


Gene families : OG_42_0001415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G416900.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
A4A49_01274 No alias nuclear poly(a) polymerase 4 0.03 Orthogroups_2024-Update
Bradi3g08637 No alias nuclear poly(a) polymerase 0.04 Orthogroups_2024-Update
Kfl00261_0030 kfl00261_0030_v1.1 (at4g32850 : 625.0) Encodes a nuclear poly(A)... 0.02 Orthogroups_2024-Update
Solyc05g008630 No alias G-type lectin S-receptor-like Serine/Threonine-kinase... 0.03 Orthogroups_2024-Update
evm.model.contig_4446.3 No alias (at1g17980 : 393.0) Encodes a poly(A) polymerase.... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0004652 polynucleotide adenylyltransferase activity IEA 16Dec
MF GO:0016779 nucleotidyltransferase activity IEA 16Dec
BP GO:0043631 RNA polyadenylation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0061666 UFM1 ligase activity IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
MF GO:0071568 UFM1 transferase activity IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 359 418
IPR007012 PolA_pol_cen_dom 12 356
IPR002934 Polymerase_NTP_transf_dom 85 143
No external refs found!