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  5. Seita.2G419400.1

Seita.2G419400.1


Description : E3 ubiquitin ligase *(SINA)


Gene families : OG_42_0000730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000730_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G419400.1
Cluster HCAA Clusters: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
A4A49_14271 No alias e3 ubiquitin-protein ligase sinat3 0.03 Orthogroups_2024-Update
Bradi2g31640 No alias Protein with RING/U-box and TRAF-like domains 0.06 Orthogroups_2024-Update
LOC_Os07g46560 No alias seven in absentia protein family domain containing... 0.02 Orthogroups_2024-Update
Pp1s112_190V6 No alias ubiquitin ligase 0.04 Orthogroups_2024-Update
Solyc10g009420 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** K4CYB8_SOLLC) 0.02 Orthogroups_2024-Update
Sopen02g019030 No alias Seven in absentia protein family 0.02 Orthogroups_2024-Update
Sopen10g005200 No alias Seven in absentia protein family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
BP GO:0007275 multicellular organism development IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0019915 lipid storage IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 96 295
No external refs found!