1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G427000.1

Seita.2G427000.1


Description : Unknown function


Gene families : OG_42_0001605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001605_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G427000.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Bradi1g18607 No alias CW-type Zinc Finger 0.08 Orthogroups_2024-Update
Bradi2g27400 No alias CW-type Zinc Finger 0.03 Orthogroups_2024-Update
Glyma.07G249600 No alias CW-type Zinc Finger 0.03 Orthogroups_2024-Update
Glyma.15G154200 No alias CW-type Zinc Finger 0.02 Orthogroups_2024-Update
Glyma.17G024800 No alias CW-type Zinc Finger 0.03 Orthogroups_2024-Update
HORVU2Hr1G020190.5 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00032592-RA No alias (at3g62900 : 226.0) CW-type Zinc Finger; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Potri.014G132900 No alias CW-type Zinc Finger 0.05 Orthogroups_2024-Update
Sobic.002G411600.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sopen09g029550 No alias CW-type Zinc Finger 0.03 Orthogroups_2024-Update
evm.model.tig00020780.17 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR011124 Znf_CW 653 699
No external refs found!