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  5. Seita.2G429600.1

Seita.2G429600.1


Description : RNA editing factor *(PPME)


Gene families : OG_42_0008910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008910_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G429600.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Sobic.002G414800.1 No alias RNA editing factor *(PPME) 0.06 Orthogroups_2024-Update
Solyc03g118790 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Sopen03g037740 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 567
IPR002885 Pentatricopeptide_repeat 313 340
IPR002885 Pentatricopeptide_repeat 464 513
IPR002885 Pentatricopeptide_repeat 392 440
IPR002885 Pentatricopeptide_repeat 569 612
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 119 166
No external refs found!