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  5. Seita.3G007200.1

Seita.3G007200.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G007200.1
Cluster HCAA Clusters: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45250 No alias CYS, MET, PRO, and GLY protein 2 0.05 Orthogroups_2024-Update
Kfl00719_0040 kfl00719_0040_v1.... "(at1g66160 : 82.4) ""CYS, MET, PRO, and GLY protein 1""... 0.02 Orthogroups_2024-Update
LOC_Os10g03440 No alias avr9/Cf-9 rapidly elicited protein 74, putative, expressed 0.02 Orthogroups_2024-Update
Sobic.003G367000.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 11 81
No external refs found!