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  5. Seita.3G012800.1

Seita.3G012800.1


Description : choline transporter *(CHER/CTL1)


Gene families : OG_42_0003295 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003295_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G012800.1
Cluster HCAA Clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
At3g15380 No alias Choline transporter protein 1... 0.04 Orthogroups_2024-Update
evm.model.tig00000737.1 No alias (at3g15380 : 87.0) Plasma-membrane choline transporter... 0.01 Orthogroups_2024-Update
evm.model.tig00001239.11 No alias (at3g15380 : 107.0) Plasma-membrane choline transporter... 0.01 Orthogroups_2024-Update
evm.model.tig00001542.16 No alias (at3g15380 : 208.0) Plasma-membrane choline transporter... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0022857 transmembrane transporter activity IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007603 Choline_transptr-like 337 680
No external refs found!