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  5. Seita.3G015300.1

Seita.3G015300.1


Description : regulatory component *(KTN80) of Katanin ATP-dependent microtubule severing complex


Gene families : OG_42_0001613 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G015300.1
Cluster HCAA Clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Brara.C00350.1 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 Orthogroups_2024-Update
HORVU1Hr1G061600.33 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 Orthogroups_2024-Update
HORVU2Hr1G119410.12 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 Orthogroups_2024-Update
HORVU3Hr1G076760.13 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g57210 No alias katanin p80 WD40 repeat-containing subunit B1 homolog 1,... 0.03 Orthogroups_2024-Update
LOC_Os04g58130 No alias katanin p80 WD40 repeat-containing subunit B1 homolog 1,... 0.02 Orthogroups_2024-Update
PSME_00003170-RA No alias (at5g23430 : 689.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
Potri.008G002300 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Sobic.001G207400.1 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.04 Orthogroups_2024-Update
Sobic.006G267500.1 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008017 microtubule binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR028021 Katanin_C-terminal 758 914
IPR001680 WD40_repeat 54 89
IPR001680 WD40_repeat 177 215
IPR001680 WD40_repeat 95 131
IPR001680 WD40_repeat 136 173
IPR001680 WD40_repeat 11 46
No external refs found!