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  5. Seita.3G036600.1

Seita.3G036600.1


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G036600.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
148442 No alias Ribosomal protein S4 (RPS4A) family protein 0.22 Orthogroups_2024-Update
A4A49_10798 No alias 40s ribosomal protein s4 0.15 Orthogroups_2024-Update
A4A49_59874 No alias 40s ribosomal protein s4 0.11 Orthogroups_2024-Update
At2g17360 No alias 40S ribosomal protein S4-1... 0.06 Orthogroups_2024-Update
At5g07090 No alias 40S ribosomal protein S4-2... 0.11 Orthogroups_2024-Update
At5g58420 No alias 40S ribosomal protein S4-3... 0.09 Orthogroups_2024-Update
Bradi2g35620 No alias Ribosomal protein S4 (RPS4A) family protein 0.22 Orthogroups_2024-Update
Brara.B00233.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.31 Orthogroups_2024-Update
Brara.B01147.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.36 Orthogroups_2024-Update
Brara.C01137.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Brara.J01227.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Brara.J02486.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Cre06.g308250 No alias Ribosomal protein S4 (RPS4A) family protein 0.15 Orthogroups_2024-Update
GRMZM2G035017 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
GRMZM2G125271 No alias Ribosomal protein S4 (RPS4A) family protein 0.12 Orthogroups_2024-Update
Glyma.01G124300 No alias Ribosomal protein S4 (RPS4A) family protein 0.09 Orthogroups_2024-Update
Glyma.02G047800 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
Glyma.02G263200 No alias Ribosomal protein S4 (RPS4A) family protein 0.16 Orthogroups_2024-Update
Glyma.03G050300 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.18 Orthogroups_2024-Update
HORVU1Hr1G021720.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Kfl00456_0140 kfl00456_0140_v1.1 (p46299|rs4_goshi : 404.0) 40S ribosomal protein S4 -... 0.04 Orthogroups_2024-Update
LOC_Os01g25610 No alias 40S ribosomal protein S4, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g01560 No alias 40S ribosomal protein S4, putative, expressed 0.02 Orthogroups_2024-Update
MA_127596g0010 No alias (at5g58420 : 436.0) Ribosomal protein S4 (RPS4A) family... 0.15 Orthogroups_2024-Update
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.18 Orthogroups_2024-Update
Mp8g03290.1 No alias component RPS4 of SSU proteome 0.03 Orthogroups_2024-Update
PSME_00000090-RA No alias (at5g58420 : 423.0) Ribosomal protein S4 (RPS4A) family... 0.08 Orthogroups_2024-Update
Potri.013G011000 No alias Ribosomal protein S4 (RPS4A) family protein 0.08 Orthogroups_2024-Update
Pp1s282_25V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s2_16V6 No alias 40s ribosomal protein s4 0.07 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.27 Orthogroups_2024-Update
Pp1s39_422V6 No alias 40s ribosomal s4 protein 0.19 Orthogroups_2024-Update
Pp1s461_1V6 No alias 40s ribosomal protein s4 0.1 Orthogroups_2024-Update
Sobic.001G018900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Sobic.003G160900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Solyc02g070320 No alias No description available 0.18 Orthogroups_2024-Update
Solyc02g070330 No alias 40S ribosomal protein S4 (AHRD V3.3 *-* RS4_SOLTU) 0.17 Orthogroups_2024-Update
Solyc02g070340 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.1 Orthogroups_2024-Update
Solyc02g070350 No alias No description available 0.19 Orthogroups_2024-Update
Solyc02g070360 No alias No description available 0.37 Orthogroups_2024-Update
Solyc06g007360 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.02 Orthogroups_2024-Update
Sopen02g019410 No alias Ribosomal family S4e 0.28 Orthogroups_2024-Update
Sopen02g019420 No alias Ribosomal family S4e 0.09 Orthogroups_2024-Update
Sopen02g019430 No alias Ribosomal family S4e 0.15 Orthogroups_2024-Update
Sopen02g019440 No alias Ribosomal family S4e 0.33 Orthogroups_2024-Update
Sopen02g019450 No alias Ribosomal family S4e 0.33 Orthogroups_2024-Update
Sopen06g002290 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.35 Orthogroups_2024-Update
evm.model.tig00021433.38 No alias (p49398|rs4_orysa : 311.0) 40S ribosomal protein S4... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032277 40S_S4_C 212 258
IPR013845 Ribosomal_S4e_central_region 95 169
IPR002942 S4_RNA-bd 50 90
IPR013843 Ribosomal_S4e_N 3 39
IPR005824 KOW 177 211
No external refs found!