Seita.3G062600.1

Description : phragmoplastin-interacting factor *(PHIP1)

Gene families : OG_42_0005060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.3G062600.1

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sopen06g008460	No alias	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	16Dec
MF	GO:0003723	RNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	288	354
IPR000504	RRM_dom	194	262
IPR001878	Znf_CCHC	552	569
IPR001878	Znf_CCHC	449	466
IPR001878	Znf_CCHC	608	625
IPR001878	Znf_CCHC	492	509
IPR001878	Znf_CCHC	382	399
IPR001878	Znf_CCHC	406	423

External Links

No external refs found!