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  5. Seita.3G110000.1

Seita.3G110000.1


Description : Unknown function


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G110000.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
134330 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
A4A49_27226 No alias leucine-rich repeat extensin-like protein 4 0.02 Orthogroups_2024-Update
At2g19780 No alias Leucine-rich repeat (LRR) family protein... 0.04 Orthogroups_2024-Update
At5g25550 No alias Leucine-rich repeat extensin-like protein 7... 0.03 Orthogroups_2024-Update
Bradi1g14050 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Bradi2g05080 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
GRMZM2G341410 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Glyma.05G225300 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Glyma.09G188600 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
PSME_00026301-RA No alias (at4g13340 : 513.0) Leucine-rich repeat (LRR) family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 62 100
IPR001611 Leu-rich_rpt 138 196
IPR001611 Leu-rich_rpt 265 316
No external refs found!