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  5. Seita.3G113700.1

Seita.3G113700.1


Description : MYB-RELATED transcription factor *(MYB-R-R)


Gene families : OG_42_0000088 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G113700.1
Cluster HCAA Clusters: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
At3g10580 No alias Homeodomain-like superfamily protein... 0.03 Orthogroups_2024-Update
At5g61620 No alias Probable transcription factor At5g61620... 0.03 Orthogroups_2024-Update
Bradi2g23710 No alias Duplicated homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g42870 No alias myb-like transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.A03415.1 No alias MYB-RELATED transcription factor *(MYB-R-R) 0.02 Orthogroups_2024-Update
Brara.B01892.1 No alias MYB-RELATED transcription factor *(MYB-R-R) 0.02 Orthogroups_2024-Update
Glyma.05G032200 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G062200 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G229800 No alias myb-like transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G085180.3 No alias MYB-RELATED transcription factor *(MYB-R-R) 0.02 Orthogroups_2024-Update
HORVU7Hr1G072890.7 No alias MYB-RELATED transcription factor *(MYB-R-R) 0.03 Orthogroups_2024-Update
LOC_Os03g62100 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
Mp4g22430.1 No alias transcription factor (MYB-related) 0.02 Orthogroups_2024-Update
Potri.003G079500 No alias myb-like transcription factor family protein 0.03 Orthogroups_2024-Update
Pp1s13_201V6 No alias dna binding 0.02 Orthogroups_2024-Update
Sopen02g027030 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen11g002650 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!