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Description : Pentatricopeptide repeat-containing protein At4g18840 [Source:UniProtKB/Swiss-Prot;Acc:O49399]
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At4g18840 | |
| Cluster | HCCA clusters: Cluster_23 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 101093 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| 103939 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| 113567 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| A4A49_11989 | No alias | pentatricopeptide repeat-containing protein, mitochondrial | 0.03 | Orthogroups_2024-Update | |
| Bradi1g72290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi4g38420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.18G287500 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G032070.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G064880.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G047290.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G111860.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| PSME_00002641-RA | No alias | (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00017819-RA | No alias | (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056153-RA | No alias | (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| Seita.1G205700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.1G290500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.2G047600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.4G225800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
| Seita.8G017200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G030100.1 | No alias | RNA editing factor *(CWM1) | 0.06 | Orthogroups_2024-Update | |
| Sobic.003G277100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G141600.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.004G174800.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G199400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G290400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G146900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.008G066900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.008G179000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc01g081560 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Sopen01g036300 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen02g015160 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
| BP | GO:0032259 | methylation | IEP | Predicted GO |
| MF | GO:0033897 | ribonuclease T2 activity | IEP | Predicted GO |
| BP | GO:0036260 | RNA capping | IEP | Predicted GO |
| BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 343 | 363 |
| IPR002885 | Pentatricopeptide_repeat | 239 | 266 |
| IPR002885 | Pentatricopeptide_repeat | 443 | 467 |
| IPR002885 | Pentatricopeptide_repeat | 106 | 132 |
| IPR002885 | Pentatricopeptide_repeat | 179 | 202 |
| IPR002885 | Pentatricopeptide_repeat | 369 | 415 |
| IPR002885 | Pentatricopeptide_repeat | 205 | 238 |
| IPR002885 | Pentatricopeptide_repeat | 267 | 315 |
| No external refs found! |