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  5. Seita.3G126900.1

Seita.3G126900.1


Description : basal Sigma-type transcription factor


Gene families : OG_42_0006208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G126900.1
Cluster HCAA Clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
147096 No alias sigma factor E 0.05 Orthogroups_2024-Update
A4A49_16573 No alias rna polymerase sigma factor sige, chloroplasticmitochondrial 0.03 Orthogroups_2024-Update
At5g24120 No alias RNA polymerase sigma factor sigE,... 0.05 Orthogroups_2024-Update
Bradi2g14790 No alias sigma factor E 0.04 Orthogroups_2024-Update
Brara.F02635.1 No alias basal Sigma-type transcription factor 0.05 Orthogroups_2024-Update
Brara.I00582.1 No alias basal Sigma-type transcription factor 0.06 Orthogroups_2024-Update
GRMZM2G077436 No alias sigma factor E 0.05 Orthogroups_2024-Update
Glyma.06G125700 No alias sigma factor E 0.04 Orthogroups_2024-Update
HORVU1Hr1G093180.1 No alias basal Sigma-type transcription factor 0.05 Orthogroups_2024-Update
Kfl00791_0030 kfl00791_0030_v1.1 (at5g24120 : 128.0) Encodes a specialized sigma factor... 0.05 Orthogroups_2024-Update
LOC_Os05g50930 No alias RNA polymerase sigma factor, putative, expressed 0.07 Orthogroups_2024-Update
Mp3g02240.1 No alias basal transcription factor (Sigma) 0.05 Orthogroups_2024-Update
Potri.012G031100 No alias sigma factor E 0.05 Orthogroups_2024-Update
Potri.015G022100 No alias sigma factor E 0.03 Orthogroups_2024-Update
Sobic.009G250400.1 No alias basal Sigma-type transcription factor 0.16 Orthogroups_2024-Update
Solyc03g007370 No alias Sigma factor (AHRD V3.3 *** A0A0G2STU5_9ROSI) 0.03 Orthogroups_2024-Update
Sopen03g003330 No alias Sigma-70 region 3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006352 DNA-templated transcription, initiation IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 420 473
IPR007624 RNA_pol_sigma70_r3 334 401
IPR007624 RNA_pol_sigma70_r3 206 245
IPR007627 RNA_pol_sigma70_r2 252 317
No external refs found!