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  5. At4g18980

At4g18980


Description : AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]


Gene families : OG_42_0000208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g18980
Cluster HCCA clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
Brara.A01006.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.D02084.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.07G260100 No alias Protein of unknown function, DUF584 0.03 Orthogroups_2024-Update
Glyma.11G146200 No alias Protein of unknown function, DUF584 0.03 Orthogroups_2024-Update
Glyma.12G172300 No alias Protein of unknown function, DUF584 0.02 Orthogroups_2024-Update
Glyma.13G204600 No alias Protein of unknown function, DUF584 0.03 Orthogroups_2024-Update
HORVU0Hr1G005210.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g54450 No alias DUF584 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g43990 No alias DUF584 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Sobic.006G149700.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007608 Senescence_reg_S40 23 105
No external refs found!