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  5. Seita.3G155500.1

Seita.3G155500.1


Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G155500.1
Cluster HCAA Clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
266532 No alias receptor for activated C kinase 1B 0.07 Orthogroups_2024-Update
A4A49_37187 No alias guanine nucleotide-binding protein subunit beta-like protein 0.04 Orthogroups_2024-Update
At1g48630 No alias RACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908] 0.03 Orthogroups_2024-Update
At3g18130 No alias Receptor for activated C kinase 1C... 0.03 Orthogroups_2024-Update
Bradi2g17350 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g46840 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.A02955.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.E02380.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.F01274.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.H02438.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.I04799.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Cre06.g278222 No alias receptor for activated C kinase 1C 0.02 Orthogroups_2024-Update
Glyma.05G243800 No alias receptor for activated C kinase 1C 0.04 Orthogroups_2024-Update
Glyma.08G051600 No alias receptor for activated C kinase 1C 0.04 Orthogroups_2024-Update
HORVU1Hr1G083710.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
HORVU3Hr1G063670.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Kfl00025_0440 kfl00025_0440_v1.... (p25387|gblp_chlre : 555.0) Guanine nucleotide-binding... 0.02 Orthogroups_2024-Update
LOC_Os01g49290 No alias WD repeat-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.03 Orthogroups_2024-Update
PSME_00054687-RA No alias (o24076|gblp_medsa : 541.0) Guanine nucleotide-binding... 0.04 Orthogroups_2024-Update
Potri.012G052700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G041600 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s15_197V6 No alias receptor of activated protein kinase c component of 40s... 0.02 Orthogroups_2024-Update
Pp1s259_87V6 No alias receptor of activated protein kinase c component of 40s... 0.03 Orthogroups_2024-Update
Sobic.003G261100.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.009G223300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Solyc03g119040 No alias LeArcA2 protein containing 7 WD40 repeats 0.06 Orthogroups_2024-Update
Solyc06g069010 No alias LeArcA1 protein 0.05 Orthogroups_2024-Update
Solyc12g040510 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen03g037930 No alias WD domain, G-beta repeat 0.08 Orthogroups_2024-Update
Sopen06g026300 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
Sopen12g020110 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
evm.model.contig_2334.1 No alias (p25387|gblp_chlre : 464.0) Guanine nucleotide-binding... 0.05 Orthogroups_2024-Update
evm.model.tig00000169.6 No alias (p25387|gblp_chlre : 478.0) Guanine nucleotide-binding... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription factor complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006360 transcription by RNA polymerase I IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 302 326
IPR001680 WD40_repeat 250 277
IPR001680 WD40_repeat 162 195
IPR001680 WD40_repeat 110 145
IPR001680 WD40_repeat 203 237
IPR001680 WD40_repeat 10 47
IPR001680 WD40_repeat 67 103
No external refs found!