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  5. Seita.3G183600.1

Seita.3G183600.1


Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer


Gene families : OG_42_0000927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000927_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G183600.1
Cluster HCAA Clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
414577 No alias breast cancer susceptibility1 0.03 Orthogroups_2024-Update
At1g04020 No alias Breast cancer associated RING 1... 0.02 Orthogroups_2024-Update
Cre03.g174600 No alias breast cancer associated RING 1 0.02 Orthogroups_2024-Update
Kfl00116_0090 kfl00116_0090_v1.... (at1g04020 : 184.0) Encodes a protein containing two... 0.02 Orthogroups_2024-Update
Mp1g00070.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 Orthogroups_2024-Update
PSME_00014683-RA No alias (at1g04020 : 160.0) Encodes a protein containing two... 0.02 Orthogroups_2024-Update
PSME_00045597-RA No alias (at4g21070 : 127.0) Encodes AtBRCA1, an ortholog of the... 0.02 Orthogroups_2024-Update
PSME_00045645-RA No alias (at1g04020 : 157.0) Encodes a protein containing two... 0.02 Orthogroups_2024-Update
PSME_00049155-RA No alias (at1g04020 : 92.4) Encodes a protein containing two... 0.04 Orthogroups_2024-Update
Solyc08g023280 No alias RING/U-box superfamily protein (AHRD V3.3 --* AT3G07200.3) 0.04 Orthogroups_2024-Update
Sopen05g012900 No alias BRCA1 C Terminus (BRCT) domain 0.02 Orthogroups_2024-Update
Sopen08g008190 No alias BRCA1 C Terminus (BRCT) domain 0.04 Orthogroups_2024-Update
evm.model.contig_2303.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR001357 BRCT_dom 759 818
No external refs found!