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  5. Seita.3G197300.1

Seita.3G197300.1


Description : component *(eL30) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001724 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G197300.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
A4A49_02333 No alias 60s ribosomal protein l30-2 0.05 Orthogroups_2024-Update
A4A49_19973 No alias 60s ribosomal protein l30-2 0.05 Orthogroups_2024-Update
Bradi1g31460 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Orthogroups_2024-Update
Bradi2g10400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Bradi2g21770 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Brara.A02913.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.C03701.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.E02321.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.G02123.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Cre10.g420750 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Glyma.08G257100 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Glyma.10G002400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Orthogroups_2024-Update
Glyma.18G281200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G068640.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
HORVU7Hr1G110660.2 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Kfl00019_0450 kfl00019_0450_v1.1 (o49884|rl30_luplu : 186.0) 60S ribosomal protein L30 -... 0.02 Orthogroups_2024-Update
LOC_Os01g16890 No alias ribosomal protein L7Ae, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g41110 No alias ribosomal protein L7Ae, putative, expressed 0.03 Orthogroups_2024-Update
MA_6354g0010 No alias (o49884|rl30_luplu : 204.0) 60S ribosomal protein L30 -... 0.04 Orthogroups_2024-Update
PSME_00026808-RA No alias (o49884|rl30_luplu : 160.0) 60S ribosomal protein L30 -... 0.05 Orthogroups_2024-Update
PSME_00033349-RA No alias (o49884|rl30_luplu : 192.0) 60S ribosomal protein L30 -... 0.05 Orthogroups_2024-Update
Potri.007G086800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Pp1s106_167V6 No alias ribosomal protein l30 0.02 Orthogroups_2024-Update
Pp1s13_391V6 No alias ribosomal protein l30 0.09 Orthogroups_2024-Update
Pp1s41_251V6 No alias ribosomal protein l30 0.07 Orthogroups_2024-Update
Pp1s50_55V6 No alias ribosomal protein l30 0.02 Orthogroups_2024-Update
Pp1s91_111V6 No alias ribosomal protein l30 0.02 Orthogroups_2024-Update
Sobic.009G179100.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Solyc01g009100 No alias 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU) 0.1 Orthogroups_2024-Update
Solyc04g072660 No alias 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU) 0.02 Orthogroups_2024-Update
Solyc11g071490 No alias 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU) 0.05 Orthogroups_2024-Update
Sopen01g004590 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.09 Orthogroups_2024-Update
Sopen11g029180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.09 Orthogroups_2024-Update
evm.model.contig_3502.5 No alias (q9sdg6|rl30_orysa : 151.0) 60S ribosomal protein L30 -... 0.1 Orthogroups_2024-Update
evm.model.tig00001164.6 No alias (o49884|rl30_luplu : 168.0) 60S ribosomal protein L30 -... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0032048 cardiolipin metabolic process IEP Predicted GO
BP GO:0032049 cardiolipin biosynthetic process IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046471 phosphatidylglycerol metabolic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 13 105
No external refs found!