Seita.3G197600.1

Description : chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)

Gene families : OG_42_0001683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001683_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.3G197600.1
Cluster	HCAA Clusters: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
At1g50410	No alias	Helicase-like transcription factor CHR28...	0.03	Orthogroups_2024-Update
Bradi1g45620	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update
Bradi2g51727	No alias	SNF2 domain-containing protein / helicase...	0.04	Orthogroups_2024-Update
Bradi3g15380	No alias	SNF2 domain-containing protein / helicase...	0.04	Orthogroups_2024-Update
Glyma.13G183900	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	16Dec
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predicted GO
MF	GO:0005543	phospholipid binding	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008289	lipid binding	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
MF	GO:0035091	phosphatidylinositol binding	IEP	Predicted GO
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
MF	GO:0070566	adenylyltransferase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	891	991
IPR018957	Znf_C3HC4_RING-type	774	810
IPR000330	SNF2_N	288	735

External Links

No external refs found!