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  5. Seita.3G209500.1

Seita.3G209500.1


Description : pyruvate decarboxylase *(PDC) & EC_4.1 carbon-carbon lyase


Gene families : OG_42_0000963 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000963_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G209500.1
Cluster HCAA Clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03840 No alias Thiamine pyrophosphate dependent pyruvate decarboxylase... 0.04 Orthogroups_2024-Update
Seita.9G439800.1 No alias pyruvate decarboxylase *(PDC) & EC_4.1 carbon-carbon lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA 16Dec
MF GO:0003824 catalytic activity IEA 16Dec
MF GO:0030976 thiamine pyrophosphate binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR011766 TPP_enzyme-bd_C 456 581
IPR012000 Thiamin_PyroP_enz_cen_dom 246 362
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 49 216
No external refs found!