Seita.3G217000.1

Description : component *(eL36) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001685 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.3G217000.1
Cluster	HCAA Clusters: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
267958	No alias	Ribosomal protein L36e family protein	0.03	Orthogroups_2024-Update
439710	No alias	Ribosomal protein L36e family protein	0.03	Orthogroups_2024-Update
At2g37600	No alias	60S ribosomal protein L36-1...	0.03	Orthogroups_2024-Update
Bradi2g23260	No alias	Ribosomal protein L36e family protein	0.06	Orthogroups_2024-Update
Brara.C01889.1	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.D02287.1	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.E00749.1	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.G01608.1	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre12.g484050	No alias	Ribosomal protein L36e family protein	0.07	Orthogroups_2024-Update
GRMZM5G850966	No alias	Ribosomal protein L36e family protein	0.05	Orthogroups_2024-Update
Glyma.10G233900	No alias	Ribosomal protein L36e family protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G072270.1	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
HORVU5Hr1G009610.2	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
MA_10430792g0010	No alias	(at3g53740 : 140.0) Ribosomal protein L36e family...	0.03	Orthogroups_2024-Update
PSME_00032528-RA	No alias	(at3g53740 : 137.0) Ribosomal protein L36e family...	0.04	Orthogroups_2024-Update
PSME_00032530-RA	No alias	(at3g53740 : 141.0) Ribosomal protein L36e family...	0.03	Orthogroups_2024-Update
Potri.012G142600	No alias	Ribosomal protein L36e family protein	0.04	Orthogroups_2024-Update
Pp1s249_65V6	No alias	60s ribosomal protein l36-2	0.07	Orthogroups_2024-Update
Pp1s34_151V6	No alias	60s ribosomal protein l36-2	0.02	Orthogroups_2024-Update
Pp1s84_102V6	No alias	60s ribosomal protein l36-2	0.07	Orthogroups_2024-Update
Sobic.009G163800.1	No alias	component *(eL36) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Solyc01g094560	No alias	60S ribosomal protein L36 (AHRD V3.3 *** K4AZJ7_SOLLC)	0.04	Orthogroups_2024-Update
Solyc03g025520	No alias	60S ribosomal protein L36 (AHRD V3.3 *** K4BF25_SOLLC)	0.06	Orthogroups_2024-Update
Solyc06g036050	No alias	60S ribosomal protein L36 (AHRD V3.3 *** K4C4X4_SOLLC)	0.04	Orthogroups_2024-Update
Sopen01g038370	No alias	Ribosomal protein L36e	0.05	Orthogroups_2024-Update
Sopen03g004360	No alias	Ribosomal protein L36e	0.03	Orthogroups_2024-Update
Sopen06g011800	No alias	Ribosomal protein L36e	0.06	Orthogroups_2024-Update
evm.model.tig00021493.69	No alias	(at2g37600 : 127.0) Ribosomal protein L36e family...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
BP	GO:0000098	sulfur amino acid catabolic process	IEP	Predicted GO
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predicted GO
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004177	aminopeptidase activity	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008235	metalloexopeptidase activity	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predicted GO
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030145	manganese ion binding	IEP	Predicted GO
BP	GO:0030328	prenylcysteine catabolic process	IEP	Predicted GO
BP	GO:0030329	prenylcysteine metabolic process	IEP	Predicted GO
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predicted GO
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0043130	ubiquitin binding	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0044273	sulfur compound catabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Predicted GO
MF	GO:0070006	metalloaminopeptidase activity	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predicted GO
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1990380	Lys48-specific deubiquitinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000509	Ribosomal_L36e	8	101

External Links

No external refs found!

Seita.3G217000.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation