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  5. Seita.3G227200.1

Seita.3G227200.1


Description : Unknown function


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G227200.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Bradi1g45727 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g05840 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g02830 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G094840.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU3Hr1G069960.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G025400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU5Hr1G082840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g40020 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g11450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g02350 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.1G005000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G237900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.3G171500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.004G301300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc06g063110 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 152 195
No external refs found!