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Description : regulatory factor *(NCP/RCB) of plastid-encoded RNA polymerase activity
Gene families : OG_42_0004521 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004521_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.3G240300.1 | |
| Cluster | HCAA Clusters: Cluster_181 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 404435 | No alias | Thioredoxin superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.C01629.1 | No alias | regulatory factor *(NCP/RCB) of plastid-encoded RNA... | 0.04 | Orthogroups_2024-Update | |
| Sopen02g024490 | No alias | hypothetical protein | 0.02 | Orthogroups_2024-Update | |
| Sopen04g027370 | No alias | hypothetical protein | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
| MF | GO:0004827 | proline-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006479 | protein methylation | IEP | Predicted GO |
| BP | GO:0006480 | N-terminal protein amino acid methylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0006528 | asparagine metabolic process | IEP | Predicted GO |
| BP | GO:0006529 | asparagine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006839 | mitochondrial transport | IEP | Predicted GO |
| BP | GO:0006848 | pyruvate transport | IEP | Predicted GO |
| BP | GO:0006850 | mitochondrial pyruvate transmembrane transport | IEP | Predicted GO |
| BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
| MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0015718 | monocarboxylic acid transport | IEP | Predicted GO |
| BP | GO:0015849 | organic acid transport | IEP | Predicted GO |
| MF | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups | IEP | Predicted GO |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
| CC | GO:0019866 | organelle inner membrane | IEP | Predicted GO |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | Predicted GO |
| CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046942 | carboxylic acid transport | IEP | Predicted GO |
| BP | GO:0098656 | anion transmembrane transport | IEP | Predicted GO |
| BP | GO:1901475 | pyruvate transmembrane transport | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| BP | GO:1903825 | organic acid transmembrane transport | IEP | Predicted GO |
| BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Predicted GO |
| MF | GO:1990380 | Lys48-specific deubiquitinase activity | IEP | Predicted GO |
| BP | GO:1990542 | mitochondrial transmembrane transport | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |