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  5. Seita.3G244200.1

Seita.3G244200.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G244200.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
399 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At1g05750 No alias Pentatricopeptide repeat-containing protein At1g05750,... 0.03 Orthogroups_2024-Update
At2g03380 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.03 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Orthogroups_2024-Update
At2g46050 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.02 Orthogroups_2024-Update
At3g23330 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.02 Orthogroups_2024-Update
At5g40410 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 Orthogroups_2024-Update
Bradi1g00381 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g27320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g29450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g22520 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G170896 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G176523 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G264700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G088000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G008800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G313300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G107430.1 No alias RNA editing factor *(MEF10) 0.04 Orthogroups_2024-Update
HORVU7Hr1G114390.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g45840 No alias CRR2, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g51810 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g60430 No alias pentatricopeptide repeat-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00013280-RA No alias (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00018595-RA No alias (at1g11290 : 678.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00018598-RA No alias (at1g11290 : 726.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
Pp1s132_37V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.3G006500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g069500 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc02g070710 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 235 261
IPR002885 Pentatricopeptide_repeat 38 75
No external refs found!