Description : plastidial ribosome biogenesis factor *(PAC)
Gene families : OG_42_0008600 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008600_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica: Seita.3G253600.1 | |
Cluster | HCAA Clusters: Cluster_33 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi2g26440 | No alias | pale cress protein (PAC) | 0.07 | Orthogroups_2024-Update | |
GRMZM2G091900 | No alias | pale cress protein (PAC) | 0.03 | Orthogroups_2024-Update | |
Glyma.10G024400 | No alias | pale cress protein (PAC) | 0.05 | Orthogroups_2024-Update | |
HORVU1Hr1G062740.3 | No alias | plastidial ribosome biogenesis factor *(PAC) | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g32680 | No alias | PAC, putative, expressed | 0.03 | Orthogroups_2024-Update | |
Mp6g13250.1 | No alias | plastidial ribosome biogenesis factor (PAC) | 0.02 | Orthogroups_2024-Update | |
Sobic.009G127400.1 | No alias | plastidial ribosome biogenesis factor *(PAC) | 0.04 | Orthogroups_2024-Update | |
Solyc09g064790 | No alias | pale cress protein (PAC) (AHRD V3.3 *** AT2G48120.1) | 0.1 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003674 | molecular_function | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003885 | D-arabinono-1,4-lactone oxidase activity | IEP | Predicted GO |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Predicted GO |
MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | Predicted GO |
MF | GO:0004784 | superoxide dismutase activity | IEP | Predicted GO |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006144 | purine nucleobase metabolic process | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
BP | GO:0006553 | lysine metabolic process | IEP | Predicted GO |
BP | GO:0006801 | superoxide metabolic process | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Predicted GO |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009085 | lysine biosynthetic process | IEP | Predicted GO |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Predicted GO |
BP | GO:0009112 | nucleobase metabolic process | IEP | Predicted GO |
BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
MF | GO:0016899 | oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
MF | GO:0031072 | heat shock protein binding | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0046112 | nucleobase biosynthetic process | IEP | Predicted GO |
BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Predicted GO |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
MF | GO:2001070 | starch binding | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |