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  5. Seita.3G265600.1

Seita.3G265600.1


Description : aminoacyl-tRNA binding factor *(eEF1A))


Gene families : OG_42_0000485 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000485_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G265600.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
169717 No alias GTP binding Elongation factor Tu family protein 0.11 Orthogroups_2024-Update
171512 No alias GTP binding Elongation factor Tu family protein 0.08 Orthogroups_2024-Update
AC233866.1_FG006 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
Bradi0012s00100 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
Bradi1g06861 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
Bradi1g06870 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
Bradi1g65725 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
Brara.B01038.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Brara.B01040.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Brara.C01040.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Brara.E01218.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.03 Orthogroups_2024-Update
Brara.H02895.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.04 Orthogroups_2024-Update
Brara.I05331.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.04 Orthogroups_2024-Update
Brara.J01398.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.06 Orthogroups_2024-Update
GRMZM2G110509 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
GRMZM2G149768 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
GRMZM2G151193 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
GRMZM2G153541 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
GRMZM2G154218 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
GRMZM2G343543 No alias GTP binding Elongation factor Tu family protein 0.02 Orthogroups_2024-Update
Glyma.05G089000 No alias GTP binding Elongation factor Tu family protein 0.04 Orthogroups_2024-Update
Glyma.05G114900 No alias GTP binding Elongation factor Tu family protein 0.05 Orthogroups_2024-Update
Glyma.10G212900 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
Glyma.19G052400 No alias GTP binding Elongation factor Tu family protein 0.09 Orthogroups_2024-Update
HORVU0Hr1G017020.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.03 Orthogroups_2024-Update
HORVU4Hr1G056740.5 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.04 Orthogroups_2024-Update
HORVU4Hr1G056820.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.04 Orthogroups_2024-Update
HORVU4Hr1G056830.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.05 Orthogroups_2024-Update
HORVU5Hr1G100200.3 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.03 Orthogroups_2024-Update
HORVU5Hr1G100700.3 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.03 Orthogroups_2024-Update
MA_434977g0010 No alias (p25698|ef1a_soybn : 756.0) Elongation factor 1-alpha... 0.05 Orthogroups_2024-Update
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Orthogroups_2024-Update
Mp6g18140.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.02 Orthogroups_2024-Update
PSME_00014556-RA No alias (o64937|ef1a_orysa : 851.0) Elongation factor 1-alpha... 0.06 Orthogroups_2024-Update
PSME_00025384-RA No alias (p34823|ef1a2_dauca : 351.0) Elongation factor 1-alpha... 0.02 Orthogroups_2024-Update
PSME_00035389-RA No alias (p34823|ef1a2_dauca : 304.0) Elongation factor 1-alpha... 0.06 Orthogroups_2024-Update
Potri.010G219500 No alias GTP binding Elongation factor Tu family protein 0.03 Orthogroups_2024-Update
Pp1s59_188V6 No alias elongation factor 1- 0.03 Orthogroups_2024-Update
Pp1s7_445V6 No alias elongation factor 1- 0.02 Orthogroups_2024-Update
Sobic.010G182100.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Sobic.010G182300.1 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.09 Orthogroups_2024-Update
Sobic.010G182600.4 No alias aminoacyl-tRNA binding factor *(eEF1A)) 0.04 Orthogroups_2024-Update
Solyc06g005060 No alias elongation factor 1-alpha 0.06 Orthogroups_2024-Update
Solyc06g009960 No alias Elongation factor 1-alpha (AHRD V3.3 *-* EF1A_SOLLC) 0.04 Orthogroups_2024-Update
Sopen06g004650 No alias Elongation factor Tu GTP binding domain 0.06 Orthogroups_2024-Update
Sopen11g027830 No alias Elongation factor Tu GTP binding domain 0.04 Orthogroups_2024-Update
evm.model.contig_509.2 No alias (p25698|ef1a_soybn : 335.0) Elongation factor 1-alpha... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000795 TF_GTP-bd_dom 5 222
IPR004160 Transl_elong_EFTu/EF1A_C 321 429
IPR004161 EFTu-like_2 248 313
No external refs found!