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  5. Seita.3G269600.1

Seita.3G269600.1


Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer


Gene families : OG_42_0000599 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G269600.1
Cluster HCAA Clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
A4A49_09526 No alias ribulose bisphosphate carboxylase small chain, chloroplastic 0.04 Orthogroups_2024-Update
Cre02.g120100 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 Orthogroups_2024-Update
Glyma.19G046800 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G035720.5 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 Orthogroups_2024-Update
HORVU2Hr1G010630.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 Orthogroups_2024-Update
HORVU2Hr1G010670.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 Orthogroups_2024-Update
HORVU2Hr1G010690.15 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 Orthogroups_2024-Update
Kfl00012_0630 kfl00012_0630_v1.1 (p26573|rbs8_nicpl : 186.0) Ribulose bisphosphate... 0.02 Orthogroups_2024-Update
Kfl00093_0320 kfl00093_0320_v1.1 (o65349|rbs_capan : 181.0) Ribulose bisphosphate... 0.02 Orthogroups_2024-Update
MA_47626g0010 No alias (p10053|rbs_pinth : 299.0) Ribulose bisphosphate... 0.04 Orthogroups_2024-Update
Mp4g06000.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 Orthogroups_2024-Update
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 Orthogroups_2024-Update
Mp4g15070.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 Orthogroups_2024-Update
Pp1s109_145V6 No alias ribulose- -bisphosphate carboxylase oxygenase small subunit 0.02 Orthogroups_2024-Update
Pp1s12_231V6 No alias ribulose- -bisphosphate carboxylase oxygenase small subunit 0.03 Orthogroups_2024-Update
Pp1s251_44V6 No alias ribulose- -bisphosphate carboxylase oxygenase small subunit 0.02 Orthogroups_2024-Update
Pp1s352_14V6 No alias ribulose- -bisphosphate carboxylase oxygenase small subunit 0.02 Orthogroups_2024-Update
Pp1s459_14V6 No alias Ribulose bisphosphate carboxylase small chain,... 0.03 Orthogroups_2024-Update
Pp1s46_42V6 No alias ribulose- -bisphosphate carboxylase oxygenase small subunit 0.08 Orthogroups_2024-Update
Pp1s545_4V6 No alias ribulose- -bisphosphate carboxylase oxygenase small subunit 0.03 Orthogroups_2024-Update
Sobic.005G042000.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 Orthogroups_2024-Update
Solyc02g063150 No alias RuBP carboxylase small subunit 0.03 Orthogroups_2024-Update
Solyc02g085950 No alias cell wall protein X77373 0.05 Orthogroups_2024-Update
Solyc03g034220 No alias Tomato RuBP carboxylase small subunit 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0009975 cyclase activity IEP Predicted GO
MF GO:0009976 tocopherol cyclase activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000894 RuBisCO_sc_dom 57 164
IPR024680 RuBisCO_ssu_N 8 30
No external refs found!