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  5. At4g20390

At4g20390


Description : CASP-like protein 1B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP0]


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g20390
Cluster HCCA clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
At2g27370 No alias Casparian strip membrane protein 3... 0.04 Orthogroups_2024-Update
Bradi2g12830 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Brara.C03372.1 No alias lignin polymerization scaffold protein *(CASP) 0.03 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I00232.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.K01555.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.02G109600 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Glyma.07G196300 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Glyma.07G251200 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Glyma.15G191800 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Glyma.17G023100 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
HORVU7Hr1G091440.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os07g26110 No alias membrane associated DUF588 domain containing protein,... 0.03 Orthogroups_2024-Update
Potri.009G160000 No alias Uncharacterised protein family (UPF0497) 0.06 Orthogroups_2024-Update
Solyc01g067300 No alias CASP-like protein (AHRD V3.3 *** K4AWX9_SOLLC) 0.03 Orthogroups_2024-Update
Solyc01g067330 No alias CASP-like protein (AHRD V3.3 *** K4AWY2_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g072550 No alias CASP-like protein (AHRD V3.3 *** K4C8X5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g074550 No alias CASP-like protein (AHRD V3.3 *** M1ASY5_SOLTU) 0.04 Orthogroups_2024-Update
Sopen01g029100 No alias Domain of unknown function (DUF588) 0.03 Orthogroups_2024-Update
Sopen09g004940 No alias Domain of unknown function (DUF588) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 14 168
No external refs found!