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  5. Seita.3G282400.1

Seita.3G282400.1


Description : Unknown function


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G282400.1
Cluster HCAA Clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g44200 No alias retrotransposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
LOC_Os02g19280 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g14380 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g42990 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Seita.1G148500.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEA 16Dec
MF GO:0003678 DNA helicase activity IEA 16Dec
BP GO:0006281 DNA repair IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025476 Helitron_helicase-like 272 398
IPR010285 DNA_helicase_pif1-like 760 933
IPR010285 DNA_helicase_pif1-like 686 756
No external refs found!