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  5. Seita.3G302000.1

Seita.3G302000.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G302000.1
Cluster HCAA Clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
101273 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
A4A49_11165 No alias ring-h2 finger protein atl8 0.04 Orthogroups_2024-Update
At2g35910 No alias RING-H2 finger protein ATL70... 0.03 Orthogroups_2024-Update
Bradi3g05840 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.E00872.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G015409 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00066_0030 kfl00066_0030_v1.1 (at1g23980 : 83.2) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
LOC_Os02g58540 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10436208g0010 No alias (at1g72200 : 100.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_124750g0010 No alias (at5g01880 : 92.8) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
PSME_00003022-RA No alias (at1g72200 : 164.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
PSME_00054098-RA No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
Pp1s14_164V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Seita.7G110600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.002G233000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sopen04g029750 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen06g017190 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g001310 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 133 176
No external refs found!