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  5. Seita.3G308800.1

Seita.3G308800.1


Description : psbJ/psbN-translation activator *(LPE1)


Gene families : OG_42_0008587 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008587_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G308800.1
Cluster HCAA Clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
A4A49_28411 No alias pentatricopeptide repeat-containing protein 0.06 Orthogroups_2024-Update
GRMZM2G056116 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Orthogroups_2024-Update
LOC_Os12g18640 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
Sobic.010G249700.1 No alias psbJ/psbN-translation activator *(LPE1) 0.09 Orthogroups_2024-Update
Solyc02g093620 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen02g038250 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005548 phospholipid transporter activity IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015914 phospholipid transport IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 528 576
IPR033443 PPR_long 361 520
IPR002885 Pentatricopeptide_repeat 174 232
IPR002885 Pentatricopeptide_repeat 119 148
No external refs found!