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  5. Seita.3G333900.1

Seita.3G333900.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G333900.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
165098 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
431592 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
A4A49_32955 No alias putative pectinesterase 53 0.02 Orthogroups_2024-Update
Brara.J02514.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Glyma.01G066300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G035100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G025500 No alias pectin methylesterase 31 0.02 Orthogroups_2024-Update
HORVU7Hr1G076580.1 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
MA_101720g0010 No alias (at3g29090 : 389.0) Encodes an atypical pectin... 0.03 Orthogroups_2024-Update
Mp1g00190.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Potri.006G134800 No alias pectin methylesterase 1 0.03 Orthogroups_2024-Update
Pp1s112_175V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s112_177V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s461_15V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.9G525400.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.001G490800.1 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Sobic.002G370300.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006270 DNA replication initiation IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 118 413
No external refs found!