1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.3G343100.1

Seita.3G343100.1


Description : NADPH-oxidase *(Rboh)


Gene families : OG_42_0000215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G343100.1
Cluster HCAA Clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Bradi3g37530 No alias Riboflavin synthase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G018900 No alias respiratory burst oxidase protein F 0.04 Orthogroups_2024-Update
Seita.8G141900.1 No alias NADPH-oxidase *(Rboh) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEA 16Dec
MF GO:0005509 calcium ion binding IEA 16Dec
MF GO:0016491 oxidoreductase activity IEA 16Dec
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR013623 NADPH_Ox 129 227
IPR013121 Fe_red_NAD-bd_6 715 878
IPR013112 FAD-bd_8 591 708
IPR002048 EF_hand_dom 228 254
IPR013130 Fe3_Rdtase_TM_dom 389 546
No external refs found!