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  5. Seita.3G347600.1

Seita.3G347600.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G347600.1
Cluster HCAA Clusters: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
Bradi2g37327 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU0Hr1G013190.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
HORVU1Hr1G071960.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU2Hr1G043860.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.07 Orthogroups_2024-Update
HORVU6Hr1G006120.2 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os03g51200 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_10434390g0010 No alias (at5g54640 : 110.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
MA_213048g0010 No alias (p50567|h2a_chlre : 115.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.03 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.04 Orthogroups_2024-Update
PSME_00049247-RA No alias (p50567|h2a_chlre : 114.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
Sobic.001G296700.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Solyc09g010400 No alias Histone H2A (AHRD V3.3 *** K4CR67_SOLLC) 0.03 Orthogroups_2024-Update
Sopen12g001250 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_498.5 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 92 126
IPR007125 Histone_H2A/H2B/H3 11 89
No external refs found!