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  5. Seita.3G361100.1

Seita.3G361100.1


Description : component *(uS4) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G361100.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
157263 No alias Ribosomal protein S4 0.08 Orthogroups_2024-Update
74302 No alias Ribosomal protein S4 0.07 Orthogroups_2024-Update
A4A49_39942 No alias 40s ribosomal protein s9-2 0.08 Orthogroups_2024-Update
A4A49_60535 No alias 40s ribosomal protein s9-2 0.05 Orthogroups_2024-Update
At5g39850 No alias 40S ribosomal protein S9-2... 0.03 Orthogroups_2024-Update
Bradi1g20580 No alias Ribosomal protein S4 0.13 Orthogroups_2024-Update
Bradi1g61090 No alias Ribosomal protein S4 0.12 Orthogroups_2024-Update
Bradi4g07120 No alias Ribosomal protein S4 0.15 Orthogroups_2024-Update
Bradi4g14160 No alias Ribosomal protein S4 0.15 Orthogroups_2024-Update
Brara.B00594.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.C00655.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Brara.J01972.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Cre08.g359750 No alias Ribosomal protein S4 0.17 Orthogroups_2024-Update
GRMZM2G108348 No alias Ribosomal protein S4 0.1 Orthogroups_2024-Update
Glyma.04G171400 No alias Ribosomal protein S4 0.13 Orthogroups_2024-Update
Glyma.05G028000 No alias Ribosomal protein S4 0.15 Orthogroups_2024-Update
Glyma.06G192500 No alias Ribosomal protein S4 0.12 Orthogroups_2024-Update
Glyma.17G098600 No alias Ribosomal protein S4 0.14 Orthogroups_2024-Update
HORVU2Hr1G028510.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
HORVU5Hr1G038920.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Kfl00038_0240 kfl00038_0240_v1.1 (at5g39850 : 306.0) Ribosomal protein S4; FUNCTIONS IN:... 0.08 Orthogroups_2024-Update
MA_10429805g0030 No alias (at5g39850 : 342.0) Ribosomal protein S4; FUNCTIONS IN:... 0.08 Orthogroups_2024-Update
MA_10431745g0020 No alias (at5g39850 : 343.0) Ribosomal protein S4; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.1 Orthogroups_2024-Update
Potri.007G056100 No alias Ribosomal protein S4 0.14 Orthogroups_2024-Update
Potri.016G076800 No alias Ribosomal protein S4 0.04 Orthogroups_2024-Update
Pp1s13_410V6 No alias 40s ribosomal protein s9 0.07 Orthogroups_2024-Update
Pp1s14_31V6 No alias 40s ribosomal protein s9 0.09 Orthogroups_2024-Update
Pp1s223_95V6 No alias 40s ribosomal protein s9 0.15 Orthogroups_2024-Update
Pp1s47_40V6 No alias 40s ribosomal protein s9 0.03 Orthogroups_2024-Update
Pp1s91_122V6 No alias 40s ribosomal protein s9 0.02 Orthogroups_2024-Update
Sobic.002G384700.2 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Sobic.002G385100.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.008G100000.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Solyc01g010540 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.15 Orthogroups_2024-Update
Solyc01g010580 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.11 Orthogroups_2024-Update
Solyc04g005680 No alias Ribosomal protein (AHRD V3.3 *** B3TM27_ELAGV) 0.03 Orthogroups_2024-Update
Solyc05g007250 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.14 Orthogroups_2024-Update
Sopen01g006190 No alias Ribosomal protein S4/S9 N-terminal domain 0.09 Orthogroups_2024-Update
Sopen01g006230 No alias Ribosomal protein S4/S9 N-terminal domain 0.18 Orthogroups_2024-Update
Sopen04g001730 No alias Ribosomal protein S4/S9 N-terminal domain 0.14 Orthogroups_2024-Update
Sopen05g003210 No alias Ribosomal protein S4/S9 N-terminal domain 0.14 Orthogroups_2024-Update
evm.model.contig_2502.7 No alias (at5g15200 : 244.0) Ribosomal protein S4; FUNCTIONS IN:... 0.17 Orthogroups_2024-Update
evm.model.tig00000826.24 No alias (at5g15200 : 271.0) Ribosomal protein S4; FUNCTIONS IN:... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 109 153
IPR001912 Ribosomal_S4/S9_N 8 107
No external refs found!