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  5. Seita.3G372700.1

Seita.3G372700.1


Description : REM-type transcription factor


Gene families : OG_42_0000707 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000707_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G372700.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14530 No alias AP2/B3-like transcriptional factor family protein 0.01 Orthogroups_2024-Update
Bradi1g14560 No alias AP2/B3-like transcriptional factor family protein 0.01 Orthogroups_2024-Update
Bradi4g37946 No alias AP2/B3-like transcriptional factor family protein 0.1 Orthogroups_2024-Update
Glyma.17G246000 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G013910.21 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G023520.10 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g42290 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g42420 No alias B3 DNA binding domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os03g42430 No alias B3 DNA binding domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os12g40080 No alias B3 DNA binding domain containing protein, expressed 0.01 Orthogroups_2024-Update
Seita.3G372300.1 No alias REM-type transcription factor 0.01 Orthogroups_2024-Update
Seita.7G295000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G166700.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G166800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G167100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G167200.1 No alias REM-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 38 127
IPR003340 B3_DNA-bd 264 356
No external refs found!