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  5. Seita.3G386400.1

Seita.3G386400.1


Description : regulatory protein *(LSD/LOL) of programmed cell death


Gene families : OG_42_0001639 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G386400.1
Cluster HCAA Clusters: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
270395 No alias LSD1 zinc finger family protein 0.04 Orthogroups_2024-Update
Brara.K01803.1 No alias regulatory protein *(LSD/LOL) of programmed cell death 0.03 Orthogroups_2024-Update
MA_10436314g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005735 Znf_LSD1 46 70
IPR005735 Znf_LSD1 7 30
IPR005735 Znf_LSD1 84 108
No external refs found!