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  5. Seita.3G386700.1

Seita.3G386700.1


Description : group-II intron splicing RNA helicase *(PMH)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G386700.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
10677 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
99603 No alias putative mitochondrial RNA helicase 2 0.04 Orthogroups_2024-Update
At3g22310 No alias DEAD-box ATP-dependent RNA helicase 9, mitochondrial... 0.04 Orthogroups_2024-Update
Bradi4g02000 No alias putative mitochondrial RNA helicase 1 0.05 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.07 Orthogroups_2024-Update
Brara.A02729.1 No alias group-II intron splicing RNA helicase *(PMH) 0.05 Orthogroups_2024-Update
Brara.B03801.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.E01722.1 No alias group-II intron splicing RNA helicase *(PMH) 0.06 Orthogroups_2024-Update
Brara.F02796.1 No alias group-II intron splicing RNA helicase *(RH3) 0.03 Orthogroups_2024-Update
Cre02.g118300 No alias DEAD box RNA helicase (PRH75) 0.04 Orthogroups_2024-Update
Cre17.g727700 No alias DEAD box RNA helicase (RH3) 0.06 Orthogroups_2024-Update
GRMZM2G565140 No alias putative mitochondrial RNA helicase 2 0.04 Orthogroups_2024-Update
Glyma.02G281200 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
Glyma.14G033400 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
Glyma.18G116700 No alias putative mitochondrial RNA helicase 2 0.02 Orthogroups_2024-Update
Glyma.20G089600 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
HORVU5Hr1G011460.1 No alias group-II intron splicing RNA helicase *(PMH) 0.06 Orthogroups_2024-Update
HORVU5Hr1G080170.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00158_0080 kfl00158_0080_v1.1 (at5g62190 : 590.0) DEAD/DEAH box RNA helicase PRH75;... 0.02 Orthogroups_2024-Update
Mp2g07080.1 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Orthogroups_2024-Update
PSME_00014810-RA No alias (q41382|rh7_spiol : 645.0) DEAD-box ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Potri.015G133400 No alias DEAD box RNA helicase (PRH75) 0.03 Orthogroups_2024-Update
Potri.016G023100 No alias putative mitochondrial RNA helicase 2 0.08 Orthogroups_2024-Update
Sobic.002G031700.1 No alias group-II intron splicing RNA helicase *(PMH) 0.08 Orthogroups_2024-Update
Sobic.002G268100.1 No alias Unknown function 0.14 Orthogroups_2024-Update
Sobic.008G165900.1 No alias group-II intron splicing RNA helicase *(PMH) 0.17 Orthogroups_2024-Update
evm.model.contig_3450.5 No alias (q41382|rh7_spiol : 422.0) DEAD-box ATP-dependent RNA... 0.01 Orthogroups_2024-Update
evm.model.tig00020734.25 No alias (at3g22330 : 256.0) DEAD-box protein required for... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 121 289
IPR001650 Helicase_C 326 435
No external refs found!