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  5. Seita.3G390300.1

Seita.3G390300.1


Description : ribosome assembly GTPase *(LSG1)


Gene families : OG_42_0004178 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004178_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G390300.1
Cluster HCAA Clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Brara.H02878.1 No alias ribosome assembly GTPase *(LSG1) 0.04 Orthogroups_2024-Update
Sobic.008G174300.1 No alias ribosome assembly GTPase *(LSG1) 0.03 Orthogroups_2024-Update
Solyc11g071910 No alias GTP-binding family protein (AHRD V3.3 *** D7KI21_ARALL) 0.02 Orthogroups_2024-Update
evm.model.contig_3416.11 No alias (at2g27200 : 168.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
InterPro domains Description Start Stop
IPR006073 GTP_binding_domain 314 380
No external refs found!