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  5. Seita.3G390700.1

Seita.3G390700.1


Description : cyclic nucleotide-gated cation channel *(CNGC)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G390700.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
A4A49_22015 No alias putative cyclic nucleotide-gated ion channel 15 0.03 Orthogroups_2024-Update
A4A49_24346 No alias cyclic nucleotide-gated ion channel 2 0.02 Orthogroups_2024-Update
At2g46450 No alias Probable cyclic nucleotide-gated ion channel 12... 0.06 Orthogroups_2024-Update
At5g53130 No alias Cyclic nucleotide-gated ion channel 1... 0.02 Orthogroups_2024-Update
Brara.G01360.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
Glyma.09G168500 No alias cyclic nucleotide-binding transporter 1 0.03 Orthogroups_2024-Update
Glyma.10G053900 No alias cyclic nucleotide-gated channel 15 0.03 Orthogroups_2024-Update
HORVU1Hr1G065990.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU5Hr1G065950.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
HORVU7Hr1G079400.3 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
LOC_Os03g55100 No alias cyclic nucleotide-gated ion channel 2, putative, expressed 0.04 Orthogroups_2024-Update
Potri.001G407800 No alias cyclic nucleotide-gated cation channel 4 0.03 Orthogroups_2024-Update
Potri.018G106100 No alias cyclic nucleotide gated channel 5 0.02 Orthogroups_2024-Update
Sopen02g033280 No alias Cyclic nucleotide-binding domain 0.02 Orthogroups_2024-Update
Sopen06g017960 No alias Ion transport protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA 16Dec
BP GO:0006811 ion transport IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 552 637
IPR005821 Ion_trans_dom 128 454
No external refs found!