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  5. Seita.3G398300.1

Seita.3G398300.1


Description : Unknown function


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G398300.1
Cluster HCAA Clusters: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
163447 No alias ubiquitin 4 0.02 Orthogroups_2024-Update
173723 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
271198 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
At3g09790 No alias Polyubiquitin 8 [Source:UniProtKB/Swiss-Prot;Acc:Q39256] 0.03 Orthogroups_2024-Update
Bradi1g32700 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Bradi1g32860 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Bradi2g38317 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 Orthogroups_2024-Update
Brara.C02747.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
GRMZM2G005461 No alias ubiquitin 9 0.03 Orthogroups_2024-Update
Glyma.13G176100 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Glyma.15G129800 No alias Ribosomal protein S27a / Ubiquitin family protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G065100.3 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
HORVU6Hr1G021700.4 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G029100.1 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
LOC_Os05g06770 No alias 40S ribosomal protein S27a, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g27930 No alias ubiquitin fusion protein, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os09g31019 No alias ubiquitin fusion protein, putative, expressed 0.05 Orthogroups_2024-Update
MA_10000516g0010 No alias (at2g47110 : 160.0) polyubiquitin gene; ubiquitin 6... 0.03 Orthogroups_2024-Update
MA_100402g0010 No alias (at4g02890 : 582.0) Polyubiquitin gene containing 4... 0.04 Orthogroups_2024-Update
MA_10326002g0010 No alias (at4g05320 : 855.0) One of five polyubiquitin genes in... 0.03 Orthogroups_2024-Update
MA_10431748g0020 No alias (at5g03240 : 437.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_1213520g0010 No alias (at5g03240 : 165.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_13121g0010 No alias (at5g03240 : 264.0) encodes ubiquitin that is attached... 0.05 Orthogroups_2024-Update
MA_369963g0010 No alias (at5g03240 : 444.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_371071g0010 No alias (at5g03240 : 517.0) encodes ubiquitin that is attached... 0.04 Orthogroups_2024-Update
MA_41251g0030 No alias (at4g05320 : 844.0) One of five polyubiquitin genes in... 0.03 Orthogroups_2024-Update
MA_46617g0010 No alias (at5g03240 : 212.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_5869456g0010 No alias (at5g03240 : 181.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_94077g0010 No alias (at5g03240 : 515.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
Potri.004G094100 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Potri.006G129600 No alias ubiquitin 4 0.03 Orthogroups_2024-Update
Potri.011G134200 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Seita.4G259900.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
Seita.4G265000.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
Sobic.002G178700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G178800.2 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G050100.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
Sobic.005G099100.3 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.010G225300.2 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
Sobic.010G239500.6 No alias UBQ ubiquitin-fold protein 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0018580 nitronate monooxygenase activity IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 90 162
No external refs found!