1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.3G401900.1

Seita.3G401900.1


Description : Unknown function


Gene families : OG_42_0000187 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000187_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G401900.1
Cluster HCAA Clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
Bradi1g18335 No alias F-box/RNI-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g43735 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g15140 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g34191 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g60240 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g23252 No alias Function unknown 0.03 Orthogroups_2024-Update
LOC_Os04g39070 No alias OsFBX139 - F-box domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g03900 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os11g09478 No alias OsFBX402 - F-box domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g12480 No alias OsFBL54 - F-box domain and LRR containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.3G255100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G106400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G148400.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!