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  5. Seita.4G017800.1

Seita.4G017800.1


Description : Unknown function


Gene families : OG_42_0003879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G017800.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
126756 No alias embryo sac development arrest 7 0.05 Orthogroups_2024-Update
At3g56990 No alias AT3g56990/F24I3_70 [Source:UniProtKB/TrEMBL;Acc:Q9M1J9] 0.03 Orthogroups_2024-Update
Bradi1g49657 No alias embryo sac development arrest 7 0.09 Orthogroups_2024-Update
Cre03.g159950 No alias embryo sac development arrest 7 0.07 Orthogroups_2024-Update
GRMZM2G087196 No alias embryo sac development arrest 7 0.03 Orthogroups_2024-Update
GRMZM2G092797 No alias embryo sac development arrest 7 0.05 Orthogroups_2024-Update
Glyma.07G106900 No alias embryo sac development arrest 7 0.04 Orthogroups_2024-Update
Glyma.09G171000 No alias embryo sac development arrest 7 0.03 Orthogroups_2024-Update
Kfl00345_0030 kfl00345_0030_v1.1 (at3g56990 : 589.0) embryo sac development arrest 7... 0.02 Orthogroups_2024-Update
Mp7g13920.1 No alias no hits & (original description: none) 0.1 Orthogroups_2024-Update
Potri.016G037400 No alias embryo sac development arrest 7 0.03 Orthogroups_2024-Update
Pp1s151_6V6 No alias nucleolar protein 10 0.02 Orthogroups_2024-Update
Sobic.010G017900.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Solyc10g085580 No alias putative embryo sac development arrest 7 0.05 Orthogroups_2024-Update
Sopen10g034990 No alias NUC153 domain 0.13 Orthogroups_2024-Update
evm.model.tig00000388.46 No alias (at3g56990 : 320.0) embryo sac development arrest 7... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription factor complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006360 transcription by RNA polymerase I IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR012580 NUC153 501 527
No external refs found!