Description : Unknown function
Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica: Seita.4G018800.1 | |
Cluster | HCAA Clusters: Cluster_138 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
402120 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Orthogroups_2024-Update | |
420704 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | Orthogroups_2024-Update | |
At1g02370 | No alias | Pentatricopeptide repeat-containing protein At1g02370,... | 0.05 | Orthogroups_2024-Update | |
At1g15480 | No alias | Pentatricopeptide repeat-containing protein At1g15480,... | 0.04 | Orthogroups_2024-Update | |
At1g80270 | No alias | PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] | 0.06 | Orthogroups_2024-Update | |
At4g01990 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.03 | Orthogroups_2024-Update | |
At5g09450 | No alias | Pentatricopeptide repeat-containing protein At5g09450,... | 0.05 | Orthogroups_2024-Update | |
Bradi1g49750 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.11 | Orthogroups_2024-Update | |
Bradi2g10850 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.09 | Orthogroups_2024-Update | |
Bradi3g30100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.C02834.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
Brara.E02579.1 | No alias | RNA editing factor *(POCO) | 0.06 | Orthogroups_2024-Update | |
Brara.F01064.1 | No alias | RNA editing factor *(POCO) | 0.08 | Orthogroups_2024-Update | |
Brara.G02029.1 | No alias | RNA editing factor *(POCO) | 0.07 | Orthogroups_2024-Update | |
GRMZM2G131817 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G160994 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.02G000600 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.03 | Orthogroups_2024-Update | |
Glyma.02G011200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.03G108100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.07G119200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Orthogroups_2024-Update | |
Glyma.08G176700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
Glyma.08G283500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.10G000600 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | Orthogroups_2024-Update | |
Glyma.12G203800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.19G129900 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G120330.3 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU7Hr1G011310.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
LOC_Os04g25410 | No alias | pentatricopeptide repeat domain containing protein,... | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g12140 | No alias | PPR repeat domain containing protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g40750 | No alias | PPR repeat domain containing protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
LOC_Os12g07260 | No alias | PPR repeat domain containing protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
MA_77400g0010 | No alias | (at1g15480 : 202.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
Potri.011G051500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Potri.013G132500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G132700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G133000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.016G036100 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.06 | Orthogroups_2024-Update | |
Potri.016G063400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.018G079600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.2G083900.1 | No alias | RNA editing factor *(POCO) | 0.03 | Orthogroups_2024-Update | |
Sobic.001G203500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G078100.1 | No alias | RNA editing factor *(POCO) | 0.07 | Orthogroups_2024-Update | |
Sobic.003G134000.2 | No alias | RNA editing factor *(POCO) | 0.05 | Orthogroups_2024-Update | |
Sobic.003G144000.1 | No alias | Unknown function | 0.15 | Orthogroups_2024-Update | |
Sobic.010G018900.1 | No alias | Unknown function | 0.1 | Orthogroups_2024-Update | |
Solyc01g079320 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.04 | Orthogroups_2024-Update | |
Solyc02g078330 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.06 | Orthogroups_2024-Update | |
Solyc06g005140 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.06 | Orthogroups_2024-Update | |
Solyc07g063220 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.02 | Orthogroups_2024-Update | |
Solyc11g006380 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc12g020050 | No alias | DNA-binding protein DQ117941 | 0.03 | Orthogroups_2024-Update | |
Sopen01g035710 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update | |
Sopen06g001130 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen07g031410 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen11g002280 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen12g010730 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000313 | organellar ribosome | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0003896 | DNA primase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005761 | mitochondrial ribosome | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
BP | GO:0008608 | attachment of spindle microtubules to kinetochore | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
BP | GO:0022402 | cell cycle process | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0031262 | Ndc80 complex | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0051315 | attachment of mitotic spindle microtubules to kinetochore | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
BP | GO:1903047 | mitotic cell cycle process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No external refs found! |