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  5. Seita.4G021400.1

Seita.4G021400.1


Description : component *(RAD1-LIKE) of 9-1-1 DNA damage sensor complex


Gene families : OG_42_0007060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G021400.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bradi1g50020 No alias damaged DNA binding;exodeoxyribonuclease IIIs 0.03 Orthogroups_2024-Update
GRMZM2G021439 No alias damaged DNA binding;exodeoxyribonuclease IIIs 0.06 Orthogroups_2024-Update
Sobic.010G021900.1 No alias component *(RAD1-LIKE) of 9-1-1 DNA damage sensor complex 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000077 DNA damage checkpoint IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003021 Rad1_Rec1_Rad17 16 264
No external refs found!